Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.68■□□□□ 0.1
H3F3AP84243 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.68■□□□□ 0.1
H3F3AP84243 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 AC106795.1-205ENST00000512851 1056 ntBASIC15.68■□□□□ 0.1
H3F3AP84243 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.68■□□□□ 0.1
H3F3AP84243 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.68■□□□□ 0.1
H3F3AP84243 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
H3F3AP84243 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.68■□□□□ 0.1
H3F3AP84243 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 AL732292.2-201ENST00000609649 430 ntBASIC15.68■□□□□ 0.1
H3F3AP84243 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.68■□□□□ 0.1
H3F3AP84243 LYSMD4-203ENST00000378904 2122 ntBASIC15.68■□□□□ 0.1
H3F3AP84243 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H3F3AP84243 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 AP005117.1-201ENST00000584346 1413 ntBASIC15.68■□□□□ 0.1
H3F3AP84243 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.68■□□□□ 0.1
H3F3AP84243 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.67■□□□□ 0.1
H3F3AP84243 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.67■□□□□ 0.1
H3F3AP84243 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.67■□□□□ 0.1
H3F3AP84243 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.67■□□□□ 0.1
H3F3AP84243 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.67■□□□□ 0.1
H3F3AP84243 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.67■□□□□ 0.1
H3F3AP84243 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.67■□□□□ 0.1
H3F3AP84243 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
H3F3AP84243 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
H3F3AP84243 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
H3F3AP84243 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.67■□□□□ 0.1
H3F3AP84243 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
H3F3AP84243 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
H3F3AP84243 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H3F3AP84243 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
H3F3AP84243 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
H3F3AP84243 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.66■□□□□ 0.1
H3F3AP84243 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
H3F3AP84243 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.66■□□□□ 0.1
H3F3AP84243 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.66■□□□□ 0.1
H3F3AP84243 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.66■□□□□ 0.1
H3F3AP84243 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.66■□□□□ 0.1
H3F3AP84243 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.66■□□□□ 0.1
H3F3AP84243 AP001269.4-201ENST00000609611 512 ntBASIC15.66■□□□□ 0.1
H3F3AP84243 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 AC073592.4-201ENST00000623827 446 ntBASIC15.66■□□□□ 0.1
H3F3AP84243 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.66■□□□□ 0.1
H3F3AP84243 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
H3F3AP84243 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.66■□□□□ 0.1
H3F3AP84243 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms