Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 AC005915.1-201ENST00000624912 2018 ntBASIC14.38□□□□□ -0.11
NKX2-1P43699 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 AC097488.1-201ENST00000507834 756 ntBASIC14.38□□□□□ -0.11
NKX2-1P43699 C1QBPP2-201ENST00000528754 825 ntBASIC14.38□□□□□ -0.11
NKX2-1P43699 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.38□□□□□ -0.11
NKX2-1P43699 MMD2-204ENST00000612910 778 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX2-1P43699 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX2-1P43699 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.38□□□□□ -0.11
NKX2-1P43699 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX2-1P43699 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
NKX2-1P43699 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX2-1P43699 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX2-1P43699 FLJ16779-201ENST00000612722 7638 ntBASIC14.38□□□□□ -0.11
NKX2-1P43699 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX2-1P43699 AC011270.2-201ENST00000624293 2550 ntBASIC14.37□□□□□ -0.11
NKX2-1P43699 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.37□□□□□ -0.11
NKX2-1P43699 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC14.37□□□□□ -0.11
NKX2-1P43699 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC14.37□□□□□ -0.11
NKX2-1P43699 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC14.37□□□□□ -0.11
NKX2-1P43699 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 ITM2C-210ENST00000620962 501 ntBASIC14.37□□□□□ -0.11
NKX2-1P43699 CR769767.2-201ENST00000622735 460 ntBASIC14.37□□□□□ -0.11
NKX2-1P43699 AC008741.2-201ENST00000612792 3115 ntBASIC14.37□□□□□ -0.11
NKX2-1P43699 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NKX2-1P43699 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
NKX2-1P43699 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
NKX2-1P43699 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NKX2-1P43699 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
NKX2-1P43699 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.37□□□□□ -0.11
NKX2-1P43699 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX2-1P43699 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
NKX2-1P43699 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 AC068587.6-202ENST00000641839 5619 ntBASIC14.36□□□□□ -0.11
NKX2-1P43699 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
NKX2-1P43699 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.36□□□□□ -0.11
NKX2-1P43699 LINC00167-201ENST00000530583 1419 ntBASIC14.36□□□□□ -0.11
NKX2-1P43699 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
NKX2-1P43699 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NKX2-1P43699 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms