Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.06■□□□□ 0.16
RFC3P40938 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.06■□□□□ 0.16
RFC3P40938 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.06■□□□□ 0.16
RFC3P40938 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
RFC3P40938 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.06■□□□□ 0.16
RFC3P40938 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.05■□□□□ 0.16
RFC3P40938 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 HLA-J-201ENST00000462773 1622 ntBASIC16.05■□□□□ 0.16
RFC3P40938 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 PMPCAP1-201ENST00000508114 1576 ntBASIC16.05■□□□□ 0.16
RFC3P40938 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.05■□□□□ 0.16
RFC3P40938 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
RFC3P40938 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.05■□□□□ 0.16
RFC3P40938 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
RFC3P40938 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
RFC3P40938 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
RFC3P40938 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.05■□□□□ 0.16
RFC3P40938 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
RFC3P40938 AC122714.2-201ENST00000502787 707 ntBASIC16.05■□□□□ 0.16
RFC3P40938 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.05■□□□□ 0.16
RFC3P40938 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.05■□□□□ 0.16
RFC3P40938 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.05■□□□□ 0.16
RFC3P40938 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.05■□□□□ 0.16
RFC3P40938 AC023511.2-201ENST00000618803 211 ntBASIC16.05■□□□□ 0.16
RFC3P40938 AC073592.5-201ENST00000624854 528 ntBASIC16.05■□□□□ 0.16
RFC3P40938 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFC3P40938 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.05■□□□□ 0.16
RFC3P40938 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.05■□□□□ 0.16
RFC3P40938 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
RFC3P40938 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
RFC3P40938 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.05■□□□□ 0.16
RFC3P40938 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 AP002414.3-201ENST00000589352 1468 ntBASIC16.04■□□□□ 0.16
RFC3P40938 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 COX5BP2-201ENST00000392354 334 ntBASIC16.04■□□□□ 0.16
RFC3P40938 PMS2P1-201ENST00000431037 1228 ntBASIC16.04■□□□□ 0.16
RFC3P40938 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.04■□□□□ 0.16
RFC3P40938 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.04■□□□□ 0.16
RFC3P40938 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.04■□□□□ 0.16
RFC3P40938 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.04■□□□□ 0.16
RFC3P40938 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 AC079776.2-201ENST00000641154 1609 ntBASIC16.04■□□□□ 0.16
RFC3P40938 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFC3P40938 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.04■□□□□ 0.16
RFC3P40938 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFC3P40938 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFC3P40938 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.03■□□□□ 0.16
RFC3P40938 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFC3P40938 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
RFC3P40938 AC104109.2-201ENST00000602919 1418 ntBASIC16.03■□□□□ 0.16
RFC3P40938 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.03■□□□□ 0.16
RFC3P40938 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms