Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.66■□□□□ 0.26
RORAP35398 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.66■□□□□ 0.26
RORAP35398 AC092910.1-201ENST00000482027 1129 ntBASIC16.66■□□□□ 0.26
RORAP35398 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.66■□□□□ 0.26
RORAP35398 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.66■□□□□ 0.26
RORAP35398 AC105339.3-201ENST00000560043 636 ntBASIC16.66■□□□□ 0.26
RORAP35398 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.66■□□□□ 0.26
RORAP35398 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.66■□□□□ 0.26
RORAP35398 AC117500.6-201ENST00000624871 588 ntBASIC16.66■□□□□ 0.26
RORAP35398 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.66■□□□□ 0.26
RORAP35398 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RORAP35398 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.66■□□□□ 0.26
RORAP35398 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RORAP35398 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RORAP35398 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
RORAP35398 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.66■□□□□ 0.26
RORAP35398 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RORAP35398 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RORAP35398 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RORAP35398 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
RORAP35398 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.65■□□□□ 0.26
RORAP35398 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
RORAP35398 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.65■□□□□ 0.26
RORAP35398 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
RORAP35398 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.65■□□□□ 0.26
RORAP35398 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.65■□□□□ 0.26
RORAP35398 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.65■□□□□ 0.26
RORAP35398 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.65■□□□□ 0.26
RORAP35398 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.65■□□□□ 0.26
RORAP35398 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.65■□□□□ 0.26
RORAP35398 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
RORAP35398 AC019129.2-201ENST00000609837 1235 ntBASIC16.65■□□□□ 0.26
RORAP35398 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.65■□□□□ 0.26
RORAP35398 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.65■□□□□ 0.26
RORAP35398 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.65■□□□□ 0.26
RORAP35398 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
RORAP35398 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.65■□□□□ 0.26
RORAP35398 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RORAP35398 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.65■□□□□ 0.26
RORAP35398 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
RORAP35398 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.64■□□□□ 0.26
RORAP35398 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
RORAP35398 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 AC004817.3-201ENST00000602957 2129 ntBASIC16.64■□□□□ 0.25
RORAP35398 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 AC104109.2-201ENST00000602919 1418 ntBASIC16.64■□□□□ 0.25
RORAP35398 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 AC132938.5-201ENST00000624980 1813 ntBASIC16.64■□□□□ 0.25
RORAP35398 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
RORAP35398 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.64■□□□□ 0.25
RORAP35398 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.64■□□□□ 0.25
RORAP35398 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RORAP35398 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.64■□□□□ 0.25
RORAP35398 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.64■□□□□ 0.25
RORAP35398 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
RORAP35398 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
RORAP35398 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.64■□□□□ 0.25
RORAP35398 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.64■□□□□ 0.25
RORAP35398 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
RORAP35398 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms