Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC084121.3-201ENST00000641716 218 ntBASIC21.83■■□□□ 1.09
COL5A3P25940 AC105233.6-201ENST00000642093 218 ntBASIC21.83■■□□□ 1.09
COL5A3P25940 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.83■■□□□ 1.09
COL5A3P25940 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL5A3P25940 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL5A3P25940 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.83■■□□□ 1.09
COL5A3P25940 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL5A3P25940 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL5A3P25940 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL5A3P25940 TUBB3P1-201ENST00000405796 1332 ntBASIC21.83■■□□□ 1.08
COL5A3P25940 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL5A3P25940 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.83■■□□□ 1.08
COL5A3P25940 AC005237.2-201ENST00000434368 219 ntBASIC21.83■■□□□ 1.08
COL5A3P25940 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.83■■□□□ 1.08
COL5A3P25940 SLC25A39P2-201ENST00000537614 270 ntBASIC21.83■■□□□ 1.08
COL5A3P25940 AC005225.4-201ENST00000557330 545 ntBASIC21.83■■□□□ 1.08
COL5A3P25940 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.83■■□□□ 1.08
COL5A3P25940 AC008761.3-201ENST00000624803 892 ntBASIC21.83■■□□□ 1.08
COL5A3P25940 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.08
COL5A3P25940 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL5A3P25940 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 MRPS18AP1-201ENST00000414458 589 ntBASIC21.82■■□□□ 1.08
COL5A3P25940 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
COL5A3P25940 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.82■■□□□ 1.08
COL5A3P25940 MIR3909-201ENST00000579518 119 ntBASIC21.82■■□□□ 1.08
COL5A3P25940 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 AL139327.4-201ENST00000612362 153 ntBASIC21.82■■□□□ 1.08
COL5A3P25940 RAB34-224ENST00000636513 888 ntTSL 5 BASIC21.82■■□□□ 1.08
COL5A3P25940 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
COL5A3P25940 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.82■■□□□ 1.08
COL5A3P25940 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL5A3P25940 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL5A3P25940 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.82■■□□□ 1.08
COL5A3P25940 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL5A3P25940 FO538757.1-201ENST00000623083 1397 ntBASIC21.82■■□□□ 1.08
COL5A3P25940 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.81■■□□□ 1.08
COL5A3P25940 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.81■■□□□ 1.08
COL5A3P25940 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 SPCS2P4-201ENST00000436160 681 ntBASIC21.81■■□□□ 1.08
COL5A3P25940 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.81■■□□□ 1.08
COL5A3P25940 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.81■■□□□ 1.08
COL5A3P25940 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.81■■□□□ 1.08
COL5A3P25940 MIR4515-201ENST00000584082 81 ntBASIC21.81■■□□□ 1.08
COL5A3P25940 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.81■■□□□ 1.08
COL5A3P25940 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
COL5A3P25940 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.81■■□□□ 1.08
COL5A3P25940 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC21.81■■□□□ 1.08
COL5A3P25940 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.81■■□□□ 1.08
COL5A3P25940 GNAS-203ENST00000306120 1878 ntBASIC21.81■■□□□ 1.08
COL5A3P25940 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
COL5A3P25940 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.81■■□□□ 1.08
COL5A3P25940 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.81■■□□□ 1.08
COL5A3P25940 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL5A3P25940 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
COL5A3P25940 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
COL5A3P25940 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL5A3P25940 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL5A3P25940 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL5A3P25940 HMGA1P7-201ENST00000406908 502 ntBASIC21.8■■□□□ 1.08
COL5A3P25940 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC21.8■■□□□ 1.08
COL5A3P25940 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.8■■□□□ 1.08
COL5A3P25940 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.8■■□□□ 1.08
COL5A3P25940 HLA-J-202ENST00000469281 1241 ntBASIC21.8■■□□□ 1.08
COL5A3P25940 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.8■■□□□ 1.08
COL5A3P25940 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC21.8■■□□□ 1.08
COL5A3P25940 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
COL5A3P25940 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL5A3P25940 AC093503.3-201ENST00000624917 2352 ntBASIC21.8■■□□□ 1.08
COL5A3P25940 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
COL5A3P25940 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.8■■□□□ 1.08
COL5A3P25940 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.8■■□□□ 1.08
COL5A3P25940 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.8■■□□□ 1.08
COL5A3P25940 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL5A3P25940 AC005412.3-201ENST00000580309 715 ntBASIC21.8■■□□□ 1.08
COL5A3P25940 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC21.8■■□□□ 1.08
COL5A3P25940 MIR6080-201ENST00000617359 66 ntBASIC21.8■■□□□ 1.08
COL5A3P25940 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL5A3P25940 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL5A3P25940 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.79■■□□□ 1.08
COL5A3P25940 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
COL5A3P25940 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.79■■□□□ 1.08
COL5A3P25940 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL5A3P25940 AC008677.1-201ENST00000519230 1561 ntBASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms