Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.47■□□□□ 0.55
BDNFP23560 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.47■□□□□ 0.55
BDNFP23560 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.47■□□□□ 0.55
BDNFP23560 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.47■□□□□ 0.55
BDNFP23560 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BDNFP23560 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.47■□□□□ 0.55
BDNFP23560 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 AP002414.3-201ENST00000589352 1468 ntBASIC18.46■□□□□ 0.55
BDNFP23560 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.46■□□□□ 0.55
BDNFP23560 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
BDNFP23560 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.46■□□□□ 0.55
BDNFP23560 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.46■□□□□ 0.55
BDNFP23560 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 AC105339.3-201ENST00000560043 636 ntBASIC18.46■□□□□ 0.55
BDNFP23560 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.46■□□□□ 0.55
BDNFP23560 LINC01451-201ENST00000623792 534 ntBASIC18.46■□□□□ 0.55
BDNFP23560 AF228730.7-201ENST00000641842 219 ntBASIC18.46■□□□□ 0.55
BDNFP23560 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 AL355312.1-201ENST00000407115 2176 ntBASIC18.46■□□□□ 0.55
BDNFP23560 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.46■□□□□ 0.55
BDNFP23560 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
BDNFP23560 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.46■□□□□ 0.55
BDNFP23560 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.46■□□□□ 0.55
BDNFP23560 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
BDNFP23560 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BDNFP23560 LINC00304-203ENST00000565008 1864 ntBASIC18.46■□□□□ 0.54
BDNFP23560 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.46■□□□□ 0.54
BDNFP23560 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
BDNFP23560 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
BDNFP23560 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
BDNFP23560 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.45■□□□□ 0.54
BDNFP23560 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.45■□□□□ 0.54
BDNFP23560 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.45■□□□□ 0.54
BDNFP23560 AC098831.1-202ENST00000438821 336 ntBASIC18.45■□□□□ 0.54
BDNFP23560 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.45■□□□□ 0.54
BDNFP23560 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.45■□□□□ 0.54
BDNFP23560 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.45■□□□□ 0.54
BDNFP23560 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.45■□□□□ 0.54
BDNFP23560 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.45■□□□□ 0.54
BDNFP23560 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.45■□□□□ 0.54
BDNFP23560 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.45■□□□□ 0.54
BDNFP23560 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.45■□□□□ 0.54
BDNFP23560 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BDNFP23560 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
BDNFP23560 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
BDNFP23560 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.44■□□□□ 0.54
BDNFP23560 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BDNFP23560 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms