Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL6A1P12109 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A1P12109 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
COL6A1P12109 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A1P12109 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A1P12109 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.21■□□□□ 0.67
COL6A1P12109 RN7SL589P-201ENST00000481268 310 ntBASIC19.21■□□□□ 0.67
COL6A1P12109 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 SLC25A39P2-201ENST00000537614 270 ntBASIC19.21■□□□□ 0.67
COL6A1P12109 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
COL6A1P12109 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A1P12109 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
COL6A1P12109 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A1P12109 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A1P12109 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.21■□□□□ 0.67
COL6A1P12109 AC100803.2-201ENST00000562459 1963 ntBASIC19.21■□□□□ 0.67
COL6A1P12109 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.21■□□□□ 0.66
COL6A1P12109 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A1P12109 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A1P12109 OR8S1-201ENST00000310194 1080 ntBASIC19.2■□□□□ 0.66
COL6A1P12109 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A1P12109 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A1P12109 CRB3P1-201ENST00000449338 276 ntBASIC19.2■□□□□ 0.66
COL6A1P12109 AC125807.1-201ENST00000483097 614 ntBASIC19.2■□□□□ 0.66
COL6A1P12109 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A1P12109 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A1P12109 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A1P12109 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A1P12109 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A1P12109 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A1P12109 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A1P12109 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 TREML5P-201ENST00000421694 576 ntBASIC19.19■□□□□ 0.66
COL6A1P12109 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A1P12109 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.19■□□□□ 0.66
COL6A1P12109 BAD-207ENST00000544785 525 ntTSL 3 BASIC19.19■□□□□ 0.66
COL6A1P12109 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A1P12109 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A1P12109 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL6A1P12109 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A1P12109 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
COL6A1P12109 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL6A1P12109 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A1P12109 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 BX276092.7-203ENST00000637198 1536 ntBASIC19.19■□□□□ 0.66
COL6A1P12109 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
COL6A1P12109 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A1P12109 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A1P12109 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A1P12109 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A1P12109 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A1P12109 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A1P12109 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A1P12109 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A1P12109 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.18■□□□□ 0.66
COL6A1P12109 COQ6-210ENST00000554920 649 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A1P12109 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A1P12109 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A1P12109 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A1P12109 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms