Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PCNAP12004 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.11■□□□□ 0.33
PCNAP12004 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCNAP12004 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.11■□□□□ 0.33
PCNAP12004 GUSBP12-201ENST00000513727 720 ntBASIC17.11■□□□□ 0.33
PCNAP12004 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
PCNAP12004 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.11■□□□□ 0.33
PCNAP12004 AL136038.3-201ENST00000561909 1096 ntBASIC17.11■□□□□ 0.33
PCNAP12004 AC087388.1-201ENST00000571370 1112 ntBASIC17.11■□□□□ 0.33
PCNAP12004 AC011498.5-201ENST00000592027 486 ntBASIC17.11■□□□□ 0.33
PCNAP12004 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.11■□□□□ 0.33
PCNAP12004 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.11■□□□□ 0.33
PCNAP12004 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.11■□□□□ 0.33
PCNAP12004 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCNAP12004 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCNAP12004 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.11■□□□□ 0.33
PCNAP12004 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 TNRC18P3-201ENST00000441896 2691 ntBASIC17.11■□□□□ 0.33
PCNAP12004 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCNAP12004 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.11■□□□□ 0.33
PCNAP12004 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.11■□□□□ 0.33
PCNAP12004 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.1■□□□□ 0.33
PCNAP12004 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.1■□□□□ 0.33
PCNAP12004 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.1■□□□□ 0.33
PCNAP12004 DDX43P3-201ENST00000441064 443 ntBASIC17.1■□□□□ 0.33
PCNAP12004 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.1■□□□□ 0.33
PCNAP12004 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.1■□□□□ 0.33
PCNAP12004 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PCNAP12004 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.1■□□□□ 0.33
PCNAP12004 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PCNAP12004 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.1■□□□□ 0.33
PCNAP12004 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCNAP12004 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.1■□□□□ 0.33
PCNAP12004 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
PCNAP12004 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.09■□□□□ 0.33
PCNAP12004 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.09■□□□□ 0.33
PCNAP12004 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 IGHV3-41-201ENST00000613121 348 ntBASIC17.09■□□□□ 0.33
PCNAP12004 AC124864.1-201ENST00000623408 392 ntBASIC17.09■□□□□ 0.33
PCNAP12004 AL590326.2-201ENST00000625139 305 ntBASIC17.09■□□□□ 0.33
PCNAP12004 AL121956.5-201ENST00000625261 221 ntBASIC17.09■□□□□ 0.33
PCNAP12004 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
PCNAP12004 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PCNAP12004 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCNAP12004 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PCNAP12004 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PCNAP12004 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCNAP12004 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms