Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
MMP3P08254 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.28■□□□□ 0.68
MMP3P08254 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.28■□□□□ 0.68
MMP3P08254 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
MMP3P08254 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.28■□□□□ 0.68
MMP3P08254 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.28■□□□□ 0.68
MMP3P08254 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.28■□□□□ 0.68
MMP3P08254 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.28■□□□□ 0.68
MMP3P08254 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.28■□□□□ 0.68
MMP3P08254 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.28■□□□□ 0.68
MMP3P08254 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.28■□□□□ 0.68
MMP3P08254 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
MMP3P08254 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
MMP3P08254 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
MMP3P08254 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 ABALON-201ENST00000629058 1903 ntBASIC19.27■□□□□ 0.68
MMP3P08254 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.27■□□□□ 0.68
MMP3P08254 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
MMP3P08254 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.27■□□□□ 0.68
MMP3P08254 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.27■□□□□ 0.68
MMP3P08254 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.27■□□□□ 0.68
MMP3P08254 FAM185BP-201ENST00000443595 716 ntBASIC19.27■□□□□ 0.68
MMP3P08254 ACTG1P14-201ENST00000446382 1122 ntBASIC19.27■□□□□ 0.68
MMP3P08254 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.27■□□□□ 0.68
MMP3P08254 AC027612.4-201ENST00000605371 583 ntBASIC19.27■□□□□ 0.68
MMP3P08254 ACTL9-202ENST00000612068 1252 ntBASIC19.27■□□□□ 0.68
MMP3P08254 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.27■□□□□ 0.68
MMP3P08254 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.27■□□□□ 0.68
MMP3P08254 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
MMP3P08254 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.27■□□□□ 0.68
MMP3P08254 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
MMP3P08254 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.27■□□□□ 0.67
MMP3P08254 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
MMP3P08254 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
MMP3P08254 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.27■□□□□ 0.67
MMP3P08254 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.27■□□□□ 0.67
MMP3P08254 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.27■□□□□ 0.67
MMP3P08254 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.26■□□□□ 0.67
MMP3P08254 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
MMP3P08254 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.26■□□□□ 0.67
MMP3P08254 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.26■□□□□ 0.67
MMP3P08254 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.26■□□□□ 0.67
MMP3P08254 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
MMP3P08254 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.26■□□□□ 0.67
MMP3P08254 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.26■□□□□ 0.67
MMP3P08254 RFPL4AP1-201ENST00000530883 850 ntBASIC19.26■□□□□ 0.67
MMP3P08254 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.26■□□□□ 0.67
MMP3P08254 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 AC068137.2-201ENST00000605408 478 ntBASIC19.26■□□□□ 0.67
MMP3P08254 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.26■□□□□ 0.67
MMP3P08254 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.26■□□□□ 0.67
MMP3P08254 LINC01451-201ENST00000623792 534 ntBASIC19.26■□□□□ 0.67
MMP3P08254 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.26■□□□□ 0.67
MMP3P08254 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
MMP3P08254 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
MMP3P08254 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
MMP3P08254 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.25■□□□□ 0.67
MMP3P08254 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.25■□□□□ 0.67
MMP3P08254 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
MMP3P08254 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
MMP3P08254 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
MMP3P08254 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms