Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.39■□□□□ 0.54
APOEP02649 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
APOEP02649 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
APOEP02649 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.39■□□□□ 0.54
APOEP02649 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
APOEP02649 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
APOEP02649 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 AC006116.8-202ENST00000587620 1550 ntBASIC18.39■□□□□ 0.53
APOEP02649 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.39■□□□□ 0.53
APOEP02649 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.39■□□□□ 0.53
APOEP02649 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.39■□□□□ 0.53
APOEP02649 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.39■□□□□ 0.53
APOEP02649 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.39■□□□□ 0.53
APOEP02649 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.39■□□□□ 0.53
APOEP02649 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.39■□□□□ 0.53
APOEP02649 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
APOEP02649 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
APOEP02649 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
APOEP02649 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.38■□□□□ 0.53
APOEP02649 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 COX5BP2-201ENST00000392354 334 ntBASIC18.38■□□□□ 0.53
APOEP02649 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.38■□□□□ 0.53
APOEP02649 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.38■□□□□ 0.53
APOEP02649 AC122714.2-201ENST00000502787 707 ntBASIC18.38■□□□□ 0.53
APOEP02649 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.38■□□□□ 0.53
APOEP02649 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.38■□□□□ 0.53
APOEP02649 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.38■□□□□ 0.53
APOEP02649 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.38■□□□□ 0.53
APOEP02649 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.38■□□□□ 0.53
APOEP02649 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOEP02649 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
APOEP02649 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.37■□□□□ 0.53
APOEP02649 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.37■□□□□ 0.53
APOEP02649 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.37■□□□□ 0.53
APOEP02649 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.37■□□□□ 0.53
APOEP02649 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
APOEP02649 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.37■□□□□ 0.53
APOEP02649 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
APOEP02649 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.37■□□□□ 0.53
APOEP02649 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.37■□□□□ 0.53
APOEP02649 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.37■□□□□ 0.53
APOEP02649 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.37■□□□□ 0.53
APOEP02649 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
APOEP02649 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
APOEP02649 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
APOEP02649 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
APOEP02649 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.36■□□□□ 0.53
APOEP02649 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 AC004870.1-201ENST00000315132 882 ntBASIC18.36■□□□□ 0.53
APOEP02649 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
APOEP02649 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.36■□□□□ 0.53
APOEP02649 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
APOEP02649 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms