Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD4O95243 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.89■□□□□ 0.93
MBD4O95243 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.89■□□□□ 0.93
MBD4O95243 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.89■□□□□ 0.93
MBD4O95243 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.89■□□□□ 0.93
MBD4O95243 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.89■□□□□ 0.93
MBD4O95243 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.89■□□□□ 0.93
MBD4O95243 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
MBD4O95243 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
MBD4O95243 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.89■□□□□ 0.93
MBD4O95243 AL589182.2-201ENST00000619332 1049 ntBASIC20.89■□□□□ 0.93
MBD4O95243 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD4O95243 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
MBD4O95243 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
MBD4O95243 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MBD4O95243 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.89■□□□□ 0.93
MBD4O95243 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MBD4O95243 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
MBD4O95243 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
MBD4O95243 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 AC097637.2-201ENST00000624096 1997 ntBASIC20.88■□□□□ 0.93
MBD4O95243 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MBD4O95243 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
MBD4O95243 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.88■□□□□ 0.93
MBD4O95243 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.88■□□□□ 0.93
MBD4O95243 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20.88■□□□□ 0.93
MBD4O95243 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.88■□□□□ 0.93
MBD4O95243 AC105339.3-201ENST00000560043 636 ntBASIC20.88■□□□□ 0.93
MBD4O95243 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.88■□□□□ 0.93
MBD4O95243 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.88■□□□□ 0.93
MBD4O95243 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.88■□□□□ 0.93
MBD4O95243 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.88■□□□□ 0.93
MBD4O95243 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MBD4O95243 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.88■□□□□ 0.93
MBD4O95243 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.88■□□□□ 0.93
MBD4O95243 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.88■□□□□ 0.93
MBD4O95243 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
MBD4O95243 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.88■□□□□ 0.93
MBD4O95243 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MBD4O95243 GNAS-203ENST00000306120 1878 ntBASIC20.88■□□□□ 0.93
MBD4O95243 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
MBD4O95243 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
MBD4O95243 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
MBD4O95243 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.87■□□□□ 0.93
MBD4O95243 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.87■□□□□ 0.93
MBD4O95243 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 AC098831.1-202ENST00000438821 336 ntBASIC20.87■□□□□ 0.93
MBD4O95243 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
MBD4O95243 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.87■□□□□ 0.93
MBD4O95243 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.87■□□□□ 0.93
MBD4O95243 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MBD4O95243 NCF1C-201ENST00000438382 1427 ntBASIC20.87■□□□□ 0.93
MBD4O95243 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
MBD4O95243 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MBD4O95243 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 ELK2BP-201ENST00000415014 1224 ntBASIC20.86■□□□□ 0.93
MBD4O95243 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.86■□□□□ 0.93
MBD4O95243 KRT18P27-201ENST00000427733 1299 ntBASIC20.86■□□□□ 0.93
MBD4O95243 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.86■□□□□ 0.93
MBD4O95243 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.86■□□□□ 0.93
MBD4O95243 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.86■□□□□ 0.93
MBD4O95243 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms