Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 PP12613-201ENST00000424958 2230 ntBASIC16.5■□□□□ 0.23
LDB3O75112 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB3O75112 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDB3O75112 AC106820.2-201ENST00000563775 3264 ntBASIC16.5■□□□□ 0.23
LDB3O75112 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.5■□□□□ 0.23
LDB3O75112 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 LYSMD4-203ENST00000378904 2122 ntBASIC16.49■□□□□ 0.23
LDB3O75112 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.49■□□□□ 0.23
LDB3O75112 AL353593.2-201ENST00000602529 1483 ntBASIC16.49■□□□□ 0.23
LDB3O75112 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
LDB3O75112 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LDB3O75112 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.49■□□□□ 0.23
LDB3O75112 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 ABCD1P5-201ENST00000445663 754 ntBASIC16.49■□□□□ 0.23
LDB3O75112 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.49■□□□□ 0.23
LDB3O75112 LINC01711-201ENST00000598340 967 ntBASIC16.49■□□□□ 0.23
LDB3O75112 AP001269.4-201ENST00000609611 512 ntBASIC16.49■□□□□ 0.23
LDB3O75112 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.49■□□□□ 0.23
LDB3O75112 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
LDB3O75112 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.49■□□□□ 0.23
LDB3O75112 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LDB3O75112 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LDB3O75112 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.49■□□□□ 0.23
LDB3O75112 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.48■□□□□ 0.23
LDB3O75112 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.48■□□□□ 0.23
LDB3O75112 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LDB3O75112 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.48■□□□□ 0.23
LDB3O75112 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.48■□□□□ 0.23
LDB3O75112 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.48■□□□□ 0.23
LDB3O75112 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 AC073592.5-201ENST00000624854 528 ntBASIC16.48■□□□□ 0.23
LDB3O75112 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
LDB3O75112 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.48■□□□□ 0.23
LDB3O75112 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LDB3O75112 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.48■□□□□ 0.23
LDB3O75112 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LDB3O75112 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LDB3O75112 AC132938.5-201ENST00000624980 1813 ntBASIC16.47■□□□□ 0.23
LDB3O75112 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.47■□□□□ 0.23
LDB3O75112 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LDB3O75112 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms