Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC22.04■■□□□ 1.12
NPHP1O15259 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC22.04■■□□□ 1.12
NPHP1O15259 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC22.04■■□□□ 1.12
NPHP1O15259 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
NPHP1O15259 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC22.04■■□□□ 1.12
NPHP1O15259 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.04■■□□□ 1.12
NPHP1O15259 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC22.03■■□□□ 1.12
NPHP1O15259 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
NPHP1O15259 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
NPHP1O15259 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC22.03■■□□□ 1.12
NPHP1O15259 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 AL645939.2-201ENST00000427340 991 ntBASIC22.03■■□□□ 1.12
NPHP1O15259 MKNK2P1-201ENST00000437526 628 ntBASIC22.03■■□□□ 1.12
NPHP1O15259 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
NPHP1O15259 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC22.03■■□□□ 1.12
NPHP1O15259 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC22.03■■□□□ 1.12
NPHP1O15259 AC109462.3-201ENST00000573934 613 ntBASIC22.03■■□□□ 1.12
NPHP1O15259 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC22.03■■□□□ 1.12
NPHP1O15259 TMED1-207ENST00000591695 809 ntTSL 5 BASIC22.03■■□□□ 1.12
NPHP1O15259 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC22.03■■□□□ 1.12
NPHP1O15259 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
NPHP1O15259 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
NPHP1O15259 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.03■■□□□ 1.12
NPHP1O15259 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC22.03■■□□□ 1.12
NPHP1O15259 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC22.03■■□□□ 1.12
NPHP1O15259 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC22.03■■□□□ 1.12
NPHP1O15259 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NPHP1O15259 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
NPHP1O15259 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC22.02■■□□□ 1.12
NPHP1O15259 SP100-208ENST00000427101 1922 ntTSL 2 BASIC22.02■■□□□ 1.12
NPHP1O15259 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
NPHP1O15259 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NPHP1O15259 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
NPHP1O15259 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NPHP1O15259 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC22.02■■□□□ 1.12
NPHP1O15259 SMN2-210ENST00000511812 867 ntTSL 2 BASIC22.02■■□□□ 1.12
NPHP1O15259 DUTP2-201ENST00000519164 463 ntBASIC22.02■■□□□ 1.12
NPHP1O15259 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.02■■□□□ 1.12
NPHP1O15259 AC010654.1-201ENST00000615722 808 ntBASIC22.02■■□□□ 1.12
NPHP1O15259 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
NPHP1O15259 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
NPHP1O15259 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NPHP1O15259 BCAR1-209ENST00000546196 1340 ntBASIC22.02■■□□□ 1.12
NPHP1O15259 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC22.02■■□□□ 1.12
NPHP1O15259 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
NPHP1O15259 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC22.01■■□□□ 1.11
NPHP1O15259 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
NPHP1O15259 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
NPHP1O15259 STK19B-204ENST00000512515 211 ntBASIC22.01■■□□□ 1.11
NPHP1O15259 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC22.01■■□□□ 1.11
NPHP1O15259 AC116407.2-201ENST00000613639 860 ntBASIC22.01■■□□□ 1.11
NPHP1O15259 AC004877.2-201ENST00000623941 599 ntBASIC22.01■■□□□ 1.11
NPHP1O15259 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC22.01■■□□□ 1.11
NPHP1O15259 BX323043.1-201ENST00000641006 1765 ntBASIC22.01■■□□□ 1.11
NPHP1O15259 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC22.01■■□□□ 1.11
NPHP1O15259 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
NPHP1O15259 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP1O15259 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
NPHP1O15259 GID4-202ENST00000376345 1391 ntTSL 3 BASIC22■■□□□ 1.11
NPHP1O15259 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22■■□□□ 1.11
NPHP1O15259 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC22■■□□□ 1.11
NPHP1O15259 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 AC097637.2-201ENST00000624096 1997 ntBASIC22■■□□□ 1.11
NPHP1O15259 PC-208ENST00000529047 1607 ntTSL 3 BASIC22■■□□□ 1.11
NPHP1O15259 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC22■■□□□ 1.11
NPHP1O15259 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC22■■□□□ 1.11
NPHP1O15259 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms