Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 NCF1C-201ENST00000438382 1427 ntBASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 AP000997.3-201ENST00000623333 2250 ntBASIC20.27■□□□□ 0.83
CTDP1Q9Y5B0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 AC007967.2-201ENST00000432613 625 ntBASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 NFIC-211ENST00000641145 8399 ntBASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 AC004408.2-201ENST00000623613 2777 ntBASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.26■□□□□ 0.83
CTDP1Q9Y5B0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 AC108751.1-201ENST00000490852 363 ntBASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 AC019129.2-201ENST00000609837 1235 ntBASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTDP1Q9Y5B0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 KRT18P27-201ENST00000427733 1299 ntBASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 AC009947.1-201ENST00000444350 727 ntBASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 AC148477.5-201ENST00000625164 1645 ntBASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CTDP1Q9Y5B0 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTDP1Q9Y5B0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms