Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 KRT18P67-201ENST00000432816 1264 ntBASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 RNPS1P1-201ENST00000507437 918 ntBASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 RNA5SP419-201ENST00000515908 135 ntBASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 AL773604.1-201ENST00000617417 272 ntBASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.81■□□□□ 0.92
CLIP2Q9UDT6 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 AF186996.4-201ENST00000467186 377 ntBASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 PRORSD1P-202ENST00000563365 2154 ntBASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP2Q9UDT6 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 SART3-203ENST00000546611 1184 ntBASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 AP001005.1-201ENST00000571755 1248 ntBASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 AP000867.4-201ENST00000641616 219 ntBASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.79■□□□□ 0.92
CLIP2Q9UDT6 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP2Q9UDT6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms