Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 KRT18P27-201ENST00000427733 1299 ntBASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 AC006557.2-201ENST00000592985 1240 ntBASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 BCL2-203ENST00000589955 5011 ntBASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 AC008764.6-201ENST00000595909 2069 ntBASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 AC093010.1-201ENST00000473625 1624 ntBASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.54■□□□□ 0.4
TM9SF3Q9HD45 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 SPDYE21P-201ENST00000413323 827 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 DNAJB3-201ENST00000446806 729 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 PRYP5-201ENST00000451909 266 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 MIR3687-2-201ENST00000577708 61 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 MIR3687-1-201ENST00000614492 61 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 AC005593.1-201ENST00000624894 515 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 SIGLEC16-201ENST00000599858 1437 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 PHGDH-209ENST00000641074 1780 ntBASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.53■□□□□ 0.4
TM9SF3Q9HD45 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 AC103564.2-201ENST00000432853 1299 ntBASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 AC112482.1-201ENST00000492080 688 ntBASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 PGM5P2-202ENST00000637225 1043 ntBASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.52■□□□□ 0.4
TM9SF3Q9HD45 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TM9SF3Q9HD45 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms