Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
BRF2Q9HAW0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRF2Q9HAW0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRF2Q9HAW0 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
BRF2Q9HAW0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRF2Q9HAW0 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 TSSC2-201ENST00000450217 709 ntBASIC16.78■□□□□ 0.28
BRF2Q9HAW0 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
BRF2Q9HAW0 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 PCED1CP-201ENST00000419887 785 ntBASIC16.77■□□□□ 0.28
BRF2Q9HAW0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 DRAXINP1-201ENST00000437611 948 ntBASIC16.77■□□□□ 0.28
BRF2Q9HAW0 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 AC087388.1-201ENST00000571370 1112 ntBASIC16.77■□□□□ 0.28
BRF2Q9HAW0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.77■□□□□ 0.28
BRF2Q9HAW0 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
BRF2Q9HAW0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 AL353593.2-201ENST00000602529 1483 ntBASIC16.76■□□□□ 0.27
BRF2Q9HAW0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRF2Q9HAW0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms