Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
VPS11Q9H270 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS11Q9H270 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS11Q9H270 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VPS11Q9H270 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS11Q9H270 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS11Q9H270 AC034232.1-201ENST00000506026 1064 ntBASIC17.67■□□□□ 0.42
VPS11Q9H270 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS11Q9H270 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS11Q9H270 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS11Q9H270 AC141257.4-201ENST00000634557 245 ntBASIC17.67■□□□□ 0.42
VPS11Q9H270 AC136944.6-201ENST00000634818 245 ntBASIC17.67■□□□□ 0.42
VPS11Q9H270 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VPS11Q9H270 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VPS11Q9H270 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS11Q9H270 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS11Q9H270 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS11Q9H270 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VPS11Q9H270 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS11Q9H270 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VPS11Q9H270 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
VPS11Q9H270 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS11Q9H270 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS11Q9H270 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS11Q9H270 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS11Q9H270 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VPS11Q9H270 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS11Q9H270 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
VPS11Q9H270 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS11Q9H270 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS11Q9H270 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.65■□□□□ 0.42
VPS11Q9H270 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS11Q9H270 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms