Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAIPQ9BWF2 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 AC034105.1-201ENST00000563488 319 ntBASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 AC073592.5-201ENST00000624854 528 ntBASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 PMS2P7-201ENST00000506558 1336 ntBASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAIPQ9BWF2 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
TRAIPQ9BWF2 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
TRAIPQ9BWF2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 AC135776.1-201ENST00000319817 2481 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 AC104109.2-201ENST00000602919 1418 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 DDX43P3-201ENST00000441064 443 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 BX005266.1-201ENST00000473402 457 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 AC092910.1-201ENST00000482027 1129 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 Z83851.2-201ENST00000609564 659 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 AC116407.2-201ENST00000613639 860 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 FAM197Y3-203ENST00000618346 717 ntBASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAIPQ9BWF2 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 AL591424.1-201ENST00000442569 1213 ntBASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 RNA5SP415-201ENST00000517246 115 ntBASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 AC027601.4-201ENST00000611259 610 ntBASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 AL589182.2-201ENST00000619332 1049 ntBASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 LTB4R2-202ENST00000528054 3092 ntBASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAIPQ9BWF2 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms