Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 NKILA-202ENST00000614771 2598 ntBASIC16.84■□□□□ 0.29
VMP1Q96GC9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 DRAXINP1-201ENST00000437611 948 ntBASIC16.84■□□□□ 0.29
VMP1Q96GC9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 KRT18P56-201ENST00000507275 550 ntBASIC16.84■□□□□ 0.29
VMP1Q96GC9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 MIR3180-1-201ENST00000580374 94 ntBASIC16.84■□□□□ 0.29
VMP1Q96GC9 MIR3180-3-201ENST00000584616 94 ntBASIC16.84■□□□□ 0.29
VMP1Q96GC9 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.84■□□□□ 0.29
VMP1Q96GC9 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VMP1Q96GC9 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VMP1Q96GC9 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
VMP1Q96GC9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VMP1Q96GC9 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VMP1Q96GC9 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VMP1Q96GC9 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VMP1Q96GC9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 AC124864.1-201ENST00000623408 392 ntBASIC16.83■□□□□ 0.28
VMP1Q96GC9 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VMP1Q96GC9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
VMP1Q96GC9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 AC011676.5-201ENST00000624864 2660 ntBASIC16.82■□□□□ 0.28
VMP1Q96GC9 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.82■□□□□ 0.28
VMP1Q96GC9 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VMP1Q96GC9 RN7SL606P-201ENST00000472779 293 ntBASIC16.82■□□□□ 0.28
VMP1Q96GC9 VENTXP7-201ENST00000475503 772 ntBASIC16.82■□□□□ 0.28
VMP1Q96GC9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms