Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 AL138966.2-201ENST00000621997 464 ntBASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 AC022898.2-201ENST00000616822 1312 ntBASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
DEPDC4Q8N2C3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 HOXB1-202ENST00000577092 1414 ntBASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 AC139887.4-201ENST00000607877 719 ntBASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 LINC00304-203ENST00000565008 1864 ntBASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
DEPDC4Q8N2C3 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 TSPY5P-201ENST00000426936 936 ntBASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms