Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 AC141586.5-201ENST00000624546 2050 ntBASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 LINC00304-203ENST00000565008 1864 ntBASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 AC133963.1-201ENST00000504166 1679 ntBASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 KRT18P65-201ENST00000439811 1286 ntBASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 AC068472.1-201ENST00000474589 881 ntBASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 KRT8P47-201ENST00000604727 1398 ntBASIC20.08■□□□□ 0.8
SH3RF1Q7Z6J0 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 OR7E14P-202ENST00000530490 1290 ntBASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SH3RF1Q7Z6J0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 AC040169.1-201ENST00000565382 521 ntBASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 AC025062.2-201ENST00000605477 670 ntBASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 AC079781.4-201ENST00000641908 219 ntBASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SH3RF1Q7Z6J0 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 AC009949.1-201ENST00000623048 1830 ntBASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SH3RF1Q7Z6J0 DNAJB3-201ENST00000446806 729 ntBASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms