Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 AC099336.1-202ENST00000602961 463 ntBASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SYNE3Q6ZMZ3 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 AC103564.2-201ENST00000432853 1299 ntBASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 LINC00304-203ENST00000565008 1864 ntBASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SYNE3Q6ZMZ3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 MIR3652-201ENST00000579335 131 ntBASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 AC011467.2-201ENST00000598425 242 ntBASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SYNE3Q6ZMZ3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 BNIP3P18-201ENST00000593976 575 ntBASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SYNE3Q6ZMZ3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 AC005104.2-201ENST00000427818 678 ntBASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 IGHV3-52-201ENST00000519770 353 ntBASIC20.65■□□□□ 0.9
SYNE3Q6ZMZ3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms