Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LETM1P2-201ENST00000597330 2178 ntBASIC17.84■□□□□ 0.45
USP39Q53GS9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
USP39Q53GS9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.84■□□□□ 0.45
USP39Q53GS9 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
USP39Q53GS9 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 AC023274.1-201ENST00000418278 595 ntBASIC17.84■□□□□ 0.45
USP39Q53GS9 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.84■□□□□ 0.45
USP39Q53GS9 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.84■□□□□ 0.45
USP39Q53GS9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.84■□□□□ 0.45
USP39Q53GS9 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
USP39Q53GS9 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
USP39Q53GS9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.84■□□□□ 0.45
USP39Q53GS9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.84■□□□□ 0.45
USP39Q53GS9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.84■□□□□ 0.45
USP39Q53GS9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
USP39Q53GS9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
USP39Q53GS9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
USP39Q53GS9 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP39Q53GS9 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP39Q53GS9 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
USP39Q53GS9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
USP39Q53GS9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
USP39Q53GS9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.83■□□□□ 0.45
USP39Q53GS9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP39Q53GS9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
USP39Q53GS9 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
USP39Q53GS9 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.83■□□□□ 0.44
USP39Q53GS9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
USP39Q53GS9 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.83■□□□□ 0.44
USP39Q53GS9 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.83■□□□□ 0.44
USP39Q53GS9 AC211486.1-202ENST00000416371 468 ntBASIC17.83■□□□□ 0.44
USP39Q53GS9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
USP39Q53GS9 AC211476.1-201ENST00000503899 468 ntBASIC17.83■□□□□ 0.44
USP39Q53GS9 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.83■□□□□ 0.44
USP39Q53GS9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.83■□□□□ 0.44
USP39Q53GS9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
USP39Q53GS9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 AC005332.8-201ENST00000622750 2735 ntBASIC17.83■□□□□ 0.44
USP39Q53GS9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.83■□□□□ 0.44
USP39Q53GS9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
USP39Q53GS9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.82■□□□□ 0.44
USP39Q53GS9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
USP39Q53GS9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 AC068880.1-201ENST00000507289 2297 ntBASIC17.82■□□□□ 0.44
USP39Q53GS9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
USP39Q53GS9 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.82■□□□□ 0.44
USP39Q53GS9 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.82■□□□□ 0.44
USP39Q53GS9 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.82■□□□□ 0.44
USP39Q53GS9 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
USP39Q53GS9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.82■□□□□ 0.44
USP39Q53GS9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USP39Q53GS9 PMPCAP1-201ENST00000508114 1576 ntBASIC17.82■□□□□ 0.44
USP39Q53GS9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms