Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC88AQ3V6T2 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 AC140878.1-201ENST00000565277 250 ntBASIC21.29■■□□□ 1
CCDC88AQ3V6T2 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 REXO1L9P-201ENST00000604264 2108 ntBASIC21.29■■□□□ 1
CCDC88AQ3V6T2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 AL121761.2-201ENST00000598007 1648 ntBASIC21.29■■□□□ 1
CCDC88AQ3V6T2 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC88AQ3V6T2 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 GAPDHP21-201ENST00000450301 1010 ntBASIC21.28■■□□□ 1
CCDC88AQ3V6T2 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 AP005018.1-201ENST00000525475 301 ntBASIC21.28■■□□□ 1
CCDC88AQ3V6T2 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 AL390754.1-201ENST00000619088 582 ntBASIC21.28■■□□□ 1
CCDC88AQ3V6T2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 AC087289.5-201ENST00000586076 3175 ntBASIC21.28■■□□□ 1
CCDC88AQ3V6T2 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 AC097637.2-201ENST00000624096 1997 ntBASIC21.28■■□□□ 1
CCDC88AQ3V6T2 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 RNA5SP421-201ENST00000516864 134 ntBASIC21.28■■□□□ 1
CCDC88AQ3V6T2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC88AQ3V6T2 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 GPS2P2-201ENST00000430745 888 ntBASIC21.27■■□□□ 1
CCDC88AQ3V6T2 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC88AQ3V6T2 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC88AQ3V6T2 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC88AQ3V6T2 AC009336.1-201ENST00000608941 1553 ntBASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms