Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 FLJ13224-201ENST00000313737 1514 ntBASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 AP005117.1-201ENST00000584346 1413 ntBASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 AC116407.3-201ENST00000623905 1129 ntBASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCDC144BQ3MJ40 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCDC144BQ3MJ40 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 MIR940-201ENST00000401276 94 ntBASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
CCDC144BQ3MJ40 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms