Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.71■□□□□ 0.11
CLRN1P58418 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.71■□□□□ 0.11
CLRN1P58418 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN1P58418 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLRN1P58418 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CLRN1P58418 FER1L4-210ENST00000615531 5998 ntBASIC15.71■□□□□ 0.1
CLRN1P58418 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CLRN1P58418 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.71■□□□□ 0.1
CLRN1P58418 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
CLRN1P58418 KRT18P1-202ENST00000452408 1331 ntBASIC15.7■□□□□ 0.1
CLRN1P58418 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN1P58418 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CLRN1P58418 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN1P58418 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN1P58418 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 TSSC2-201ENST00000450217 709 ntBASIC15.7■□□□□ 0.1
CLRN1P58418 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.7■□□□□ 0.1
CLRN1P58418 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN1P58418 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
CLRN1P58418 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
CLRN1P58418 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.7■□□□□ 0.1
CLRN1P58418 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLRN1P58418 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CLRN1P58418 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CLRN1P58418 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.69■□□□□ 0.1
CLRN1P58418 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CLRN1P58418 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.69■□□□□ 0.1
CLRN1P58418 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CLRN1P58418 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.69■□□□□ 0.1
CLRN1P58418 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CLRN1P58418 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CLRN1P58418 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.69■□□□□ 0.1
CLRN1P58418 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.69■□□□□ 0.1
CLRN1P58418 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CLRN1P58418 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CLRN1P58418 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CLRN1P58418 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 AC016734.2-201ENST00000624325 1377 ntBASIC15.69■□□□□ 0.1
CLRN1P58418 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 AC010460.3-201ENST00000511359 1579 ntBASIC15.69■□□□□ 0.1
CLRN1P58418 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.69■□□□□ 0.1
CLRN1P58418 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLRN1P58418 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.68■□□□□ 0.1
CLRN1P58418 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 AL023806.1-201ENST00000603994 1649 ntBASIC15.68■□□□□ 0.1
CLRN1P58418 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.68■□□□□ 0.1
CLRN1P58418 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CLRN1P58418 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.68■□□□□ 0.1
CLRN1P58418 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CLRN1P58418 AC141586.5-201ENST00000624546 2050 ntBASIC15.68■□□□□ 0.1
CLRN1P58418 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLRN1P58418 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
CLRN1P58418 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms