Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.66■□□□□ 0.26
LIM2P55344 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
LIM2P55344 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.66■□□□□ 0.26
LIM2P55344 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 KRT16P4-201ENST00000453883 522 ntBASIC16.66■□□□□ 0.26
LIM2P55344 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.66■□□□□ 0.26
LIM2P55344 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.66■□□□□ 0.26
LIM2P55344 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.66■□□□□ 0.26
LIM2P55344 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.66■□□□□ 0.26
LIM2P55344 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.66■□□□□ 0.26
LIM2P55344 AC019129.2-201ENST00000609837 1235 ntBASIC16.66■□□□□ 0.26
LIM2P55344 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.66■□□□□ 0.26
LIM2P55344 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIM2P55344 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.66■□□□□ 0.26
LIM2P55344 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.65■□□□□ 0.26
LIM2P55344 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.65■□□□□ 0.26
LIM2P55344 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
LIM2P55344 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.65■□□□□ 0.26
LIM2P55344 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LIM2P55344 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.65■□□□□ 0.26
LIM2P55344 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.65■□□□□ 0.26
LIM2P55344 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
LIM2P55344 AC002558.1-201ENST00000488906 803 ntBASIC16.65■□□□□ 0.26
LIM2P55344 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.65■□□□□ 0.26
LIM2P55344 AC109462.3-201ENST00000573934 613 ntBASIC16.65■□□□□ 0.26
LIM2P55344 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.65■□□□□ 0.26
LIM2P55344 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIM2P55344 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.65■□□□□ 0.26
LIM2P55344 AC012313.10-201ENST00000623509 926 ntBASIC16.65■□□□□ 0.26
LIM2P55344 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIM2P55344 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
LIM2P55344 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.65■□□□□ 0.26
LIM2P55344 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
LIM2P55344 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIM2P55344 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.64■□□□□ 0.26
LIM2P55344 AL049757.1-201ENST00000616842 1596 ntBASIC16.64■□□□□ 0.25
LIM2P55344 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.64■□□□□ 0.25
LIM2P55344 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LIM2P55344 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
LIM2P55344 TSPY19P-201ENST00000418461 509 ntBASIC16.64■□□□□ 0.25
LIM2P55344 TSPY18P-201ENST00000441642 509 ntBASIC16.64■□□□□ 0.25
LIM2P55344 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.64■□□□□ 0.25
LIM2P55344 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.64■□□□□ 0.25
LIM2P55344 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms