Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CDH6P55285 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 AC246785.2-201ENST00000432512 513 ntBASIC18.28■□□□□ 0.52
CDH6P55285 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH6P55285 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CDH6P55285 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.28■□□□□ 0.52
CDH6P55285 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH6P55285 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CDH6P55285 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CDH6P55285 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH6P55285 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH6P55285 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CDH6P55285 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CDH6P55285 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH6P55285 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDH6P55285 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH6P55285 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH6P55285 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH6P55285 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH6P55285 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH6P55285 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH6P55285 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CDH6P55285 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CDH6P55285 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDH6P55285 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH6P55285 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH6P55285 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CDH6P55285 VENTXP7-201ENST00000475503 772 ntBASIC18.27■□□□□ 0.52
CDH6P55285 AC002558.1-201ENST00000488906 803 ntBASIC18.27■□□□□ 0.52
CDH6P55285 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH6P55285 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH6P55285 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.27■□□□□ 0.52
CDH6P55285 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH6P55285 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CDH6P55285 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
CDH6P55285 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH6P55285 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH6P55285 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CDH6P55285 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH6P55285 AC020916.1-201ENST00000587762 1774 ntBASIC18.27■□□□□ 0.51
CDH6P55285 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CDH6P55285 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.27■□□□□ 0.51
CDH6P55285 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH6P55285 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CDH6P55285 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH6P55285 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CDH6P55285 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH6P55285 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH6P55285 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CDH6P55285 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CDH6P55285 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH6P55285 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.26■□□□□ 0.51
CDH6P55285 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.26■□□□□ 0.51
CDH6P55285 AP005901.3-202ENST00000581653 237 ntBASIC18.26■□□□□ 0.51
CDH6P55285 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CDH6P55285 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH6P55285 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 AL139327.4-201ENST00000612362 153 ntBASIC18.26■□□□□ 0.51
CDH6P55285 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH6P55285 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.26■□□□□ 0.51
CDH6P55285 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH6P55285 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CDH6P55285 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH6P55285 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH6P55285 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
CDH6P55285 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.25■□□□□ 0.51
CDH6P55285 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.25■□□□□ 0.51
CDH6P55285 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH6P55285 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.25■□□□□ 0.51
CDH6P55285 AP002383.4-201ENST00000442518 975 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms