Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.31■□□□□ 0.36
LIMK1P53667 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMK1P53667 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LIMK1P53667 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.31■□□□□ 0.36
LIMK1P53667 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LIMK1P53667 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 GK-202ENST00000378941 458 ntTSL 3 BASIC17.31■□□□□ 0.36
LIMK1P53667 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.31■□□□□ 0.36
LIMK1P53667 AC096734.2-201ENST00000562054 433 ntBASIC17.31■□□□□ 0.36
LIMK1P53667 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LIMK1P53667 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LIMK1P53667 AC010654.1-201ENST00000615722 808 ntBASIC17.31■□□□□ 0.36
LIMK1P53667 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.31■□□□□ 0.36
LIMK1P53667 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LIMK1P53667 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
LIMK1P53667 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
LIMK1P53667 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMK1P53667 AC015922.1-201ENST00000421102 1152 ntBASIC17.3■□□□□ 0.36
LIMK1P53667 FAM58CP-201ENST00000435741 640 ntBASIC17.3■□□□□ 0.36
LIMK1P53667 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMK1P53667 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.3■□□□□ 0.36
LIMK1P53667 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 AC069262.1-201ENST00000539058 672 ntBASIC17.3■□□□□ 0.36
LIMK1P53667 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.3■□□□□ 0.36
LIMK1P53667 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMK1P53667 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMK1P53667 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.3■□□□□ 0.36
LIMK1P53667 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.3■□□□□ 0.36
LIMK1P53667 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 AC006504.4-201ENST00000592118 1568 ntBASIC17.3■□□□□ 0.36
LIMK1P53667 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.3■□□□□ 0.36
LIMK1P53667 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LIMK1P53667 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LIMK1P53667 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LIMK1P53667 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMK1P53667 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 PMS2P4-201ENST00000412466 1052 ntBASIC17.29■□□□□ 0.36
LIMK1P53667 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.29■□□□□ 0.36
LIMK1P53667 DDX43P3-201ENST00000441064 443 ntBASIC17.29■□□□□ 0.36
LIMK1P53667 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 RPS15P9-201ENST00000494093 319 ntBASIC17.29■□□□□ 0.36
LIMK1P53667 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.29■□□□□ 0.36
LIMK1P53667 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
LIMK1P53667 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LIMK1P53667 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.29■□□□□ 0.36
LIMK1P53667 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
LIMK1P53667 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.29■□□□□ 0.36
LIMK1P53667 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.29■□□□□ 0.36
LIMK1P53667 AC015911.4-201ENST00000588022 1070 ntBASIC17.29■□□□□ 0.36
LIMK1P53667 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LIMK1P53667 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 AC004790.2-201ENST00000623588 572 ntBASIC17.29■□□□□ 0.36
LIMK1P53667 AC004877.2-201ENST00000623941 599 ntBASIC17.29■□□□□ 0.36
LIMK1P53667 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms