Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.23■□□□□ 0.83
CTCFP49711 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.23■□□□□ 0.83
CTCFP49711 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.23■□□□□ 0.83
CTCFP49711 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CTCFP49711 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.23■□□□□ 0.83
CTCFP49711 SPDYE7P-202ENST00000420373 878 ntBASIC20.23■□□□□ 0.83
CTCFP49711 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC20.23■□□□□ 0.83
CTCFP49711 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.23■□□□□ 0.83
CTCFP49711 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.23■□□□□ 0.83
CTCFP49711 GIMAP3P-201ENST00000495150 836 ntBASIC20.23■□□□□ 0.83
CTCFP49711 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.23■□□□□ 0.83
CTCFP49711 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.23■□□□□ 0.83
CTCFP49711 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CTCFP49711 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.23■□□□□ 0.83
CTCFP49711 INO80E-210ENST00000567705 880 ntTSL 3 BASIC20.23■□□□□ 0.83
CTCFP49711 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.23■□□□□ 0.83
CTCFP49711 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CTCFP49711 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.23■□□□□ 0.83
CTCFP49711 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 AIRN-201ENST00000601203 4374 ntBASIC20.23■□□□□ 0.83
CTCFP49711 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CTCFP49711 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.22■□□□□ 0.83
CTCFP49711 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CTCFP49711 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 AC008677.1-201ENST00000519230 1561 ntBASIC20.22■□□□□ 0.83
CTCFP49711 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.22■□□□□ 0.83
CTCFP49711 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.22■□□□□ 0.83
CTCFP49711 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.22■□□□□ 0.83
CTCFP49711 ACA64.2-201ENST00000459014 129 ntBASIC20.22■□□□□ 0.83
CTCFP49711 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.22■□□□□ 0.83
CTCFP49711 AC079140.1-201ENST00000508039 487 ntBASIC20.22■□□□□ 0.83
CTCFP49711 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.22■□□□□ 0.83
CTCFP49711 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.22■□□□□ 0.83
CTCFP49711 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.22■□□□□ 0.83
CTCFP49711 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CTCFP49711 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.22■□□□□ 0.83
CTCFP49711 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
CTCFP49711 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
CTCFP49711 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CTCFP49711 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CTCFP49711 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.21■□□□□ 0.83
CTCFP49711 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CTCFP49711 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CTCFP49711 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.21■□□□□ 0.83
CTCFP49711 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC20.21■□□□□ 0.83
CTCFP49711 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.21■□□□□ 0.83
CTCFP49711 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 RN7SL589P-201ENST00000481268 310 ntBASIC20.21■□□□□ 0.83
CTCFP49711 AC004890.2-204ENST00000481968 304 ntBASIC20.21■□□□□ 0.83
CTCFP49711 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 AL162274.1-201ENST00000617191 1098 ntBASIC20.21■□□□□ 0.83
CTCFP49711 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.21■□□□□ 0.83
CTCFP49711 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CTCFP49711 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CTCFP49711 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.21■□□□□ 0.83
CTCFP49711 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
CTCFP49711 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CTCFP49711 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.2■□□□□ 0.82
CTCFP49711 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.2■□□□□ 0.82
CTCFP49711 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.2■□□□□ 0.82
CTCFP49711 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 MIR658-201ENST00000385210 100 ntBASIC20.2■□□□□ 0.82
CTCFP49711 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.2■□□□□ 0.82
CTCFP49711 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms