Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GUSBP6-202ENST00000438529 1198 ntBASIC17.69■□□□□ 0.42
VIMP08670 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
VIMP08670 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VIMP08670 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.69■□□□□ 0.42
VIMP08670 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.69■□□□□ 0.42
VIMP08670 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.69■□□□□ 0.42
VIMP08670 MTDHP1-201ENST00000605323 784 ntBASIC17.69■□□□□ 0.42
VIMP08670 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.69■□□□□ 0.42
VIMP08670 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.69■□□□□ 0.42
VIMP08670 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
VIMP08670 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
VIMP08670 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.69■□□□□ 0.42
VIMP08670 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.69■□□□□ 0.42
VIMP08670 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VIMP08670 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VIMP08670 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 KRASP1-201ENST00000407852 552 ntBASIC17.68■□□□□ 0.42
VIMP08670 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 RPS2P4-201ENST00000476944 856 ntBASIC17.68■□□□□ 0.42
VIMP08670 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.68■□□□□ 0.42
VIMP08670 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VIMP08670 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.68■□□□□ 0.42
VIMP08670 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VIMP08670 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
VIMP08670 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.68■□□□□ 0.42
VIMP08670 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VIMP08670 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VIMP08670 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.67■□□□□ 0.42
VIMP08670 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.67■□□□□ 0.42
VIMP08670 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VIMP08670 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.67■□□□□ 0.42
VIMP08670 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 AC006449.5-201ENST00000610658 2098 ntBASIC17.67■□□□□ 0.42
VIMP08670 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.67■□□□□ 0.42
VIMP08670 AC016396.2-201ENST00000562575 1417 ntBASIC17.67■□□□□ 0.42
VIMP08670 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
VIMP08670 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.67■□□□□ 0.42
VIMP08670 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.67■□□□□ 0.42
VIMP08670 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.67■□□□□ 0.42
VIMP08670 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.67■□□□□ 0.42
VIMP08670 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 AC116407.2-201ENST00000613639 860 ntBASIC17.67■□□□□ 0.42
VIMP08670 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
VIMP08670 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 AC009949.1-201ENST00000623048 1830 ntBASIC17.67■□□□□ 0.42
VIMP08670 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VIMP08670 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VIMP08670 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VIMP08670 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VIMP08670 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms