Protein–RNA interactions for Protein: P08123

COL1A2, Collagen alpha-2(I) chain, humanhuman

Predictions only

Length 1,366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A2P08123 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.16■□□□□ 0.66
COL1A2P08123 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL1A2P08123 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL1A2P08123 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL1A2P08123 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
COL1A2P08123 MIR3687-2-201ENST00000577708 61 ntBASIC19.16■□□□□ 0.66
COL1A2P08123 MIR3687-1-201ENST00000614492 61 ntBASIC19.16■□□□□ 0.66
COL1A2P08123 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.16■□□□□ 0.66
COL1A2P08123 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
COL1A2P08123 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL1A2P08123 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.16■□□□□ 0.66
COL1A2P08123 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL1A2P08123 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL1A2P08123 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL1A2P08123 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.16■□□□□ 0.66
COL1A2P08123 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.15■□□□□ 0.66
COL1A2P08123 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.15■□□□□ 0.66
COL1A2P08123 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL1A2P08123 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL1A2P08123 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.15■□□□□ 0.66
COL1A2P08123 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.15■□□□□ 0.66
COL1A2P08123 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.15■□□□□ 0.66
COL1A2P08123 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.15■□□□□ 0.66
COL1A2P08123 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.15■□□□□ 0.66
COL1A2P08123 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.15■□□□□ 0.66
COL1A2P08123 OR7E47P-204ENST00000575924 449 ntBASIC19.15■□□□□ 0.66
COL1A2P08123 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.15■□□□□ 0.66
COL1A2P08123 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL1A2P08123 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL1A2P08123 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.14■□□□□ 0.66
COL1A2P08123 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
COL1A2P08123 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL1A2P08123 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL1A2P08123 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
COL1A2P08123 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
COL1A2P08123 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.14■□□□□ 0.65
COL1A2P08123 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.14■□□□□ 0.65
COL1A2P08123 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.14■□□□□ 0.65
COL1A2P08123 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.14■□□□□ 0.65
COL1A2P08123 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.14■□□□□ 0.65
COL1A2P08123 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.14■□□□□ 0.65
COL1A2P08123 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.14■□□□□ 0.65
COL1A2P08123 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
COL1A2P08123 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
COL1A2P08123 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.14■□□□□ 0.65
COL1A2P08123 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL1A2P08123 PI4KAP1-204ENST00000612579 1703 ntBASIC19.14■□□□□ 0.65
COL1A2P08123 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.14■□□□□ 0.65
COL1A2P08123 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.13■□□□□ 0.65
COL1A2P08123 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL1A2P08123 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COL1A2P08123 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.13■□□□□ 0.65
COL1A2P08123 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.13■□□□□ 0.65
COL1A2P08123 AC096734.2-201ENST00000562054 433 ntBASIC19.13■□□□□ 0.65
COL1A2P08123 AC018845.2-201ENST00000568326 409 ntBASIC19.13■□□□□ 0.65
COL1A2P08123 AC010507.1-201ENST00000633895 436 ntBASIC19.13■□□□□ 0.65
COL1A2P08123 AC133963.1-201ENST00000504166 1679 ntBASIC19.13■□□□□ 0.65
COL1A2P08123 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.13■□□□□ 0.65
COL1A2P08123 LYSMD4-203ENST00000378904 2122 ntBASIC19.13■□□□□ 0.65
COL1A2P08123 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COL1A2P08123 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL1A2P08123 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL1A2P08123 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL1A2P08123 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL1A2P08123 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL1A2P08123 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL1A2P08123 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
COL1A2P08123 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
COL1A2P08123 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL1A2P08123 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL1A2P08123 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms