Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
APOEP02649 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.42■□□□□ 0.54
APOEP02649 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.42■□□□□ 0.54
APOEP02649 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
APOEP02649 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.42■□□□□ 0.54
APOEP02649 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.42■□□□□ 0.54
APOEP02649 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.42■□□□□ 0.54
APOEP02649 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.42■□□□□ 0.54
APOEP02649 MIR5100-201ENST00000579544 119 ntBASIC18.42■□□□□ 0.54
APOEP02649 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.42■□□□□ 0.54
APOEP02649 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
APOEP02649 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
APOEP02649 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.42■□□□□ 0.54
APOEP02649 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.42■□□□□ 0.54
APOEP02649 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.42■□□□□ 0.54
APOEP02649 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.42■□□□□ 0.54
APOEP02649 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
APOEP02649 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
APOEP02649 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.41■□□□□ 0.54
APOEP02649 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.41■□□□□ 0.54
APOEP02649 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.41■□□□□ 0.54
APOEP02649 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
APOEP02649 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.41■□□□□ 0.54
APOEP02649 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.41■□□□□ 0.54
APOEP02649 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
APOEP02649 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.41■□□□□ 0.54
APOEP02649 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
APOEP02649 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
APOEP02649 AC010460.3-201ENST00000511359 1579 ntBASIC18.41■□□□□ 0.54
APOEP02649 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
APOEP02649 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.41■□□□□ 0.54
APOEP02649 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 INTS4P1-201ENST00000438455 1935 ntBASIC18.41■□□□□ 0.54
APOEP02649 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
APOEP02649 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.41■□□□□ 0.54
APOEP02649 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 BX276092.7-203ENST00000637198 1536 ntBASIC18.4■□□□□ 0.54
APOEP02649 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.4■□□□□ 0.54
APOEP02649 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.4■□□□□ 0.54
APOEP02649 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.4■□□□□ 0.54
APOEP02649 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.4■□□□□ 0.54
APOEP02649 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.4■□□□□ 0.54
APOEP02649 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.4■□□□□ 0.54
APOEP02649 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
APOEP02649 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.4■□□□□ 0.54
APOEP02649 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.4■□□□□ 0.54
APOEP02649 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
APOEP02649 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.4■□□□□ 0.54
APOEP02649 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.4■□□□□ 0.54
APOEP02649 AC012317.2-201ENST00000623305 2251 ntBASIC18.4■□□□□ 0.54
APOEP02649 FZD10-202ENST00000539839 3282 ntBASIC18.4■□□□□ 0.54
APOEP02649 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.4■□□□□ 0.54
APOEP02649 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOEP02649 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms