Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC27.13■■□□□ 1.93
PCF11O94913 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC27.13■■□□□ 1.93
PCF11O94913 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
PCF11O94913 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC27.13■■□□□ 1.93
PCF11O94913 AC099522.2-201ENST00000607001 744 ntBASIC27.13■■□□□ 1.93
PCF11O94913 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC27.13■■□□□ 1.93
PCF11O94913 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
PCF11O94913 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC27.13■■□□□ 1.93
PCF11O94913 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC27.12■■□□□ 1.93
PCF11O94913 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
PCF11O94913 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC27.12■■□□□ 1.93
PCF11O94913 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC27.12■■□□□ 1.93
PCF11O94913 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC27.12■■□□□ 1.93
PCF11O94913 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC27.12■■□□□ 1.93
PCF11O94913 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC27.12■■□□□ 1.93
PCF11O94913 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC27.12■■□□□ 1.93
PCF11O94913 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCF11O94913 PI4KAP1-204ENST00000612579 1703 ntBASIC27.12■■□□□ 1.93
PCF11O94913 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
PCF11O94913 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
PCF11O94913 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC27.11■■□□□ 1.93
PCF11O94913 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCF11O94913 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCF11O94913 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCF11O94913 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC27.11■■□□□ 1.93
PCF11O94913 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC27.11■■□□□ 1.93
PCF11O94913 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC27.11■■□□□ 1.93
PCF11O94913 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 RPL28-205ENST00000558131 444 ntTSL 5 BASIC27.11■■□□□ 1.93
PCF11O94913 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC27.11■■□□□ 1.93
PCF11O94913 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCF11O94913 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCF11O94913 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC27.11■■□□□ 1.93
PCF11O94913 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCF11O94913 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC27.1■■□□□ 1.93
PCF11O94913 AC025580.3-201ENST00000617932 1424 ntBASIC27.1■■□□□ 1.93
PCF11O94913 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 CNN2P11-201ENST00000429351 262 ntBASIC27.1■■□□□ 1.93
PCF11O94913 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC27.1■■□□□ 1.93
PCF11O94913 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC27.1■■□□□ 1.93
PCF11O94913 MED16-214ENST00000617672 554 ntTSL 5 BASIC27.1■■□□□ 1.93
PCF11O94913 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCF11O94913 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC27.1■■□□□ 1.93
PCF11O94913 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 SMN2-210ENST00000511812 867 ntTSL 2 BASIC27.09■■□□□ 1.93
PCF11O94913 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 NME9-203ENST00000383180 2133 ntTSL 2 BASIC27.09■■□□□ 1.93
PCF11O94913 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC27.09■■□□□ 1.93
PCF11O94913 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC27.09■■□□□ 1.93
PCF11O94913 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC27.09■■□□□ 1.93
PCF11O94913 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCF11O94913 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC27.09■■□□□ 1.93
PCF11O94913 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC27.08■■□□□ 1.93
PCF11O94913 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC27.08■■□□□ 1.93
PCF11O94913 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
PCF11O94913 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC27.08■■□□□ 1.93
PCF11O94913 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC27.08■■□□□ 1.93
PCF11O94913 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC27.08■■□□□ 1.93
PCF11O94913 COMP-202ENST00000425807 2292 ntTSL 2 BASIC27.08■■□□□ 1.93
PCF11O94913 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
PCF11O94913 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PCF11O94913 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC27.08■■□□□ 1.93
PCF11O94913 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
PCF11O94913 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC27.08■■□□□ 1.92
PCF11O94913 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
PCF11O94913 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
PCF11O94913 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC27.07■■□□□ 1.92
PCF11O94913 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PCF11O94913 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms