Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.46■□□□□ 0.07
LMX1BO60663 CHCHD2P8-201ENST00000429873 447 ntBASIC15.46■□□□□ 0.07
LMX1BO60663 AP002383.4-201ENST00000442518 975 ntBASIC15.46■□□□□ 0.07
LMX1BO60663 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LMX1BO60663 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.46■□□□□ 0.07
LMX1BO60663 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC15.46■□□□□ 0.07
LMX1BO60663 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.46■□□□□ 0.07
LMX1BO60663 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
LMX1BO60663 NAA38-203ENST00000575071 553 ntTSL 2 BASIC15.46■□□□□ 0.07
LMX1BO60663 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
LMX1BO60663 LINC01711-201ENST00000598340 967 ntBASIC15.46■□□□□ 0.07
LMX1BO60663 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.46■□□□□ 0.07
LMX1BO60663 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.46■□□□□ 0.07
LMX1BO60663 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LMX1BO60663 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LMX1BO60663 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LMX1BO60663 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.46■□□□□ 0.07
LMX1BO60663 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LMX1BO60663 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.46■□□□□ 0.07
LMX1BO60663 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LMX1BO60663 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.46■□□□□ 0.06
LMX1BO60663 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
LMX1BO60663 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.46■□□□□ 0.06
LMX1BO60663 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LMX1BO60663 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
LMX1BO60663 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
LMX1BO60663 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
LMX1BO60663 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 UNC93B7-201ENST00000509439 705 ntBASIC15.45■□□□□ 0.06
LMX1BO60663 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.45■□□□□ 0.06
LMX1BO60663 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.45■□□□□ 0.06
LMX1BO60663 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.45■□□□□ 0.06
LMX1BO60663 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
LMX1BO60663 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
LMX1BO60663 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LMX1BO60663 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.45■□□□□ 0.06
LMX1BO60663 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
LMX1BO60663 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 KRT18P1-202ENST00000452408 1331 ntBASIC15.44■□□□□ 0.06
LMX1BO60663 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
LMX1BO60663 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
LMX1BO60663 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.44■□□□□ 0.06
LMX1BO60663 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.44■□□□□ 0.06
LMX1BO60663 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.44■□□□□ 0.06
LMX1BO60663 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.44■□□□□ 0.06
LMX1BO60663 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.44■□□□□ 0.06
LMX1BO60663 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
LMX1BO60663 AC008687.5-201ENST00000593746 558 ntBASIC15.44■□□□□ 0.06
LMX1BO60663 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.44■□□□□ 0.06
LMX1BO60663 AC024563.2-201ENST00000603282 481 ntBASIC15.44■□□□□ 0.06
LMX1BO60663 IFNL4P1-201ENST00000607083 540 ntBASIC15.44■□□□□ 0.06
LMX1BO60663 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
LMX1BO60663 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
LMX1BO60663 NKILA-202ENST00000614771 2598 ntBASIC15.44■□□□□ 0.06
LMX1BO60663 AC011676.5-201ENST00000624864 2660 ntBASIC15.44■□□□□ 0.06
LMX1BO60663 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
LMX1BO60663 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms