Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.69■□□□□ 0.26
PROM1O43490 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.69■□□□□ 0.26
PROM1O43490 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
PROM1O43490 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 AC026396.1-201ENST00000419388 421 ntBASIC16.69■□□□□ 0.26
PROM1O43490 MINOS1P3-201ENST00000457048 203 ntBASIC16.69■□□□□ 0.26
PROM1O43490 AC122714.2-201ENST00000502787 707 ntBASIC16.69■□□□□ 0.26
PROM1O43490 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.69■□□□□ 0.26
PROM1O43490 AP000867.3-201ENST00000524675 377 ntBASIC16.69■□□□□ 0.26
PROM1O43490 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PROM1O43490 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.69■□□□□ 0.26
PROM1O43490 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.69■□□□□ 0.26
PROM1O43490 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.69■□□□□ 0.26
PROM1O43490 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.69■□□□□ 0.26
PROM1O43490 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 NSUN5P1-202ENST00000421140 1535 ntBASIC16.69■□□□□ 0.26
PROM1O43490 NSUN5P2-203ENST00000457352 1529 ntBASIC16.69■□□□□ 0.26
PROM1O43490 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.69■□□□□ 0.26
PROM1O43490 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.69■□□□□ 0.26
PROM1O43490 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PROM1O43490 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.68■□□□□ 0.26
PROM1O43490 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.68■□□□□ 0.26
PROM1O43490 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 FAM220CP-201ENST00000395253 831 ntBASIC16.68■□□□□ 0.26
PROM1O43490 DUSP5P1-201ENST00000441325 1139 ntBASIC16.68■□□□□ 0.26
PROM1O43490 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
PROM1O43490 AC074051.2-201ENST00000565115 352 ntBASIC16.68■□□□□ 0.26
PROM1O43490 AC012615.1-201ENST00000565797 1299 ntBASIC16.68■□□□□ 0.26
PROM1O43490 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.68■□□□□ 0.26
PROM1O43490 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PROM1O43490 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.68■□□□□ 0.26
PROM1O43490 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 TP73-AS1-210ENST00000637775 1455 ntBASIC16.67■□□□□ 0.26
PROM1O43490 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.67■□□□□ 0.26
PROM1O43490 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.67■□□□□ 0.26
PROM1O43490 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.67■□□□□ 0.26
PROM1O43490 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.67■□□□□ 0.26
PROM1O43490 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
PROM1O43490 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.67■□□□□ 0.26
PROM1O43490 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PROM1O43490 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.67■□□□□ 0.26
PROM1O43490 AC104819.1-201ENST00000504587 486 ntBASIC16.67■□□□□ 0.26
PROM1O43490 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.67■□□□□ 0.26
PROM1O43490 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.67■□□□□ 0.26
PROM1O43490 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.67■□□□□ 0.26
PROM1O43490 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.67■□□□□ 0.26
PROM1O43490 AC011467.2-201ENST00000598425 242 ntBASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms