Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.17□□□□□ -0.14
HMGB3O15347 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HMGB3O15347 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC14.17□□□□□ -0.14
HMGB3O15347 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HMGB3O15347 CROCCP5-201ENST00000436658 830 ntBASIC14.17□□□□□ -0.14
HMGB3O15347 AC026185.1-201ENST00000445748 174 ntBASIC14.17□□□□□ -0.14
HMGB3O15347 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC14.17□□□□□ -0.14
HMGB3O15347 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC14.17□□□□□ -0.14
HMGB3O15347 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
HMGB3O15347 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.17□□□□□ -0.14
HMGB3O15347 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.17□□□□□ -0.14
HMGB3O15347 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HMGB3O15347 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.17□□□□□ -0.14
HMGB3O15347 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
HMGB3O15347 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
HMGB3O15347 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HMGB3O15347 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
HMGB3O15347 KRT8P50-201ENST00000562022 1438 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
HMGB3O15347 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HMGB3O15347 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
HMGB3O15347 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 AC093010.1-201ENST00000473625 1624 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
HMGB3O15347 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 SDHAP2-201ENST00000455183 2001 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC14.16□□□□□ -0.14
HMGB3O15347 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC14.16□□□□□ -0.14
HMGB3O15347 SLC29A4P1-201ENST00000398760 971 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC14.16□□□□□ -0.14
HMGB3O15347 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.16□□□□□ -0.14
HMGB3O15347 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC14.16□□□□□ -0.14
HMGB3O15347 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC14.16□□□□□ -0.14
HMGB3O15347 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC14.16□□□□□ -0.14
HMGB3O15347 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.16□□□□□ -0.14
HMGB3O15347 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.16□□□□□ -0.14
HMGB3O15347 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC14.16□□□□□ -0.14
HMGB3O15347 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 VPS53-216ENST00000574029 585 ntTSL 4 BASIC14.16□□□□□ -0.14
HMGB3O15347 MIR4758-201ENST00000577688 71 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC14.16□□□□□ -0.14
HMGB3O15347 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 AC022517.1-201ENST00000592429 346 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.16□□□□□ -0.14
HMGB3O15347 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 AL138688.1-201ENST00000624851 1594 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HMGB3O15347 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 AL162727.3-201ENST00000635661 2787 ntBASIC14.16□□□□□ -0.14
HMGB3O15347 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HMGB3O15347 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC14.16□□□□□ -0.14
HMGB3O15347 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HMGB3O15347 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGB3O15347 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
HMGB3O15347 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGB3O15347 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGB3O15347 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms