Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 COX5BP8-201ENST00000416911 349 ntBASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 GPS2P2-201ENST00000430745 888 ntBASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 AC019129.2-201ENST00000609837 1235 ntBASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 FO538757.1-201ENST00000623083 1397 ntBASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.15■□□□□ 0.98
ZC3H4Q9UPT8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
ZC3H4Q9UPT8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
ZC3H4Q9UPT8 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
ZC3H4Q9UPT8 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ZC3H4Q9UPT8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ZC3H4Q9UPT8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 AL596325.1-201ENST00000563991 1082 ntBASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 STK25P1-201ENST00000585406 838 ntBASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 ACTL9-202ENST00000612068 1252 ntBASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 AL390754.1-201ENST00000619088 582 ntBASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 NEFHP1-201ENST00000412845 2629 ntBASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 AC097637.2-201ENST00000624096 1997 ntBASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZC3H4Q9UPT8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 LINC00982-205ENST00000420957 435 ntBASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 AL513480.1-201ENST00000451731 511 ntBASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 AC079140.1-201ENST00000508039 487 ntBASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 PI4KAP1-204ENST00000612579 1703 ntBASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 LETM1P2-201ENST00000597330 2178 ntBASIC21.13■□□□□ 0.97
ZC3H4Q9UPT8 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZC3H4Q9UPT8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms