Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL671277.2-201ENST00000458060 996 ntBASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 GUSBP12-201ENST00000513727 720 ntBASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 AC084018.2-201ENST00000613093 2607 ntBASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
LIMCH1Q9UPQ0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 AL645929.1-201ENST00000420084 975 ntBASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 AC007967.3-201ENST00000434308 558 ntBASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMCH1Q9UPQ0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 AC019129.2-201ENST00000609837 1235 ntBASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 AL353801.3-201ENST00000609898 542 ntBASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 AC060834.1-201ENST00000443027 2032 ntBASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMCH1Q9UPQ0 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 TSPY22P-201ENST00000427496 604 ntBASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 DUX4L26-201ENST00000489078 1255 ntBASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 AC125634.1-201ENST00000438758 1403 ntBASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms