Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 GAPDHP21-201ENST00000450301 1010 ntBASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 AC067863.1-201ENST00000494933 530 ntBASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 FUT8-AS1-201ENST00000621019 1521 ntBASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 MRPL20P1-201ENST00000400819 433 ntBASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 FAM86GP-201ENST00000448322 971 ntBASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 TK1-204ENST00000590430 683 ntTSL 3 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 AC105339.1-204ENST00000636249 355 ntBASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC33.18■■■□□ 2.9
SHROOM4Q9ULL8 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
SHROOM4Q9ULL8 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
SHROOM4Q9ULL8 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC33.17■■■□□ 2.9
SHROOM4Q9ULL8 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
SHROOM4Q9ULL8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 STK4-201ENST00000372801 2038 ntTSL 2 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 SMN2-210ENST00000511812 867 ntTSL 2 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 AC025678.2-201ENST00000562061 970 ntBASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
SHROOM4Q9ULL8 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 AC090164.3-201ENST00000610780 2143 ntBASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 KLF4P1-201ENST00000412782 1185 ntBASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 AC007274.1-201ENST00000439805 662 ntBASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 POLD4-211ENST00000539074 714 ntTSL 3 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 AC109462.3-201ENST00000573934 613 ntBASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC33.15■■■□□ 2.9
SHROOM4Q9ULL8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 AC069262.1-201ENST00000539058 672 ntBASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC33.14■■■□□ 2.9
SHROOM4Q9ULL8 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 DDX43P3-201ENST00000441064 443 ntBASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 AC068137.2-201ENST00000605408 478 ntBASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 AQP6-205ENST00000618286 829 ntTSL 5 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 AC004877.2-201ENST00000623941 599 ntBASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 PC-208ENST00000529047 1607 ntTSL 3 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
SHROOM4Q9ULL8 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms