Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.15■□□□□ 0.18
CHD8Q9HCK8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CHD8Q9HCK8 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AL355994.2-201ENST00000447882 704 ntBASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AC141586.3-201ENST00000562166 1838 ntBASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 AL049812.1-201ENST00000432563 2267 ntBASIC16.14■□□□□ 0.17
CHD8Q9HCK8 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CHD8Q9HCK8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 FXNP2-201ENST00000411625 547 ntBASIC16.13■□□□□ 0.17
CHD8Q9HCK8 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 AC234783.1-201ENST00000441761 496 ntBASIC16.13■□□□□ 0.17
CHD8Q9HCK8 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 AL583810.1-201ENST00000553344 1045 ntBASIC16.13■□□□□ 0.17
CHD8Q9HCK8 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 MYLKP1-201ENST00000509077 1580 ntBASIC16.13■□□□□ 0.17
CHD8Q9HCK8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CHD8Q9HCK8 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHD8Q9HCK8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms