Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS11Q9H270 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS11Q9H270 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS11Q9H270 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS11Q9H270 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
VPS11Q9H270 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS11Q9H270 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS11Q9H270 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VPS11Q9H270 AC113404.2-201ENST00000507884 177 ntBASIC17.7■□□□□ 0.42
VPS11Q9H270 UBALD1-205ENST00000590891 2641 ntBASIC17.7■□□□□ 0.42
VPS11Q9H270 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VPS11Q9H270 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VPS11Q9H270 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS11Q9H270 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VPS11Q9H270 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
VPS11Q9H270 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS11Q9H270 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
VPS11Q9H270 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 LINC01568-207ENST00000641790 1380 ntBASIC17.69■□□□□ 0.42
VPS11Q9H270 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VPS11Q9H270 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS11Q9H270 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS11Q9H270 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS11Q9H270 AC024563.2-201ENST00000603282 481 ntBASIC17.69■□□□□ 0.42
VPS11Q9H270 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS11Q9H270 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 AC016396.2-201ENST00000562575 1417 ntBASIC17.69■□□□□ 0.42
VPS11Q9H270 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.69■□□□□ 0.42
VPS11Q9H270 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS11Q9H270 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VPS11Q9H270 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS11Q9H270 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS11Q9H270 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VPS11Q9H270 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS11Q9H270 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS11Q9H270 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
VPS11Q9H270 KRT8P47-201ENST00000604727 1398 ntBASIC17.68■□□□□ 0.42
VPS11Q9H270 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS11Q9H270 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VPS11Q9H270 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 PCDHA14-201ENST00000506751 2298 ntBASIC17.68■□□□□ 0.42
VPS11Q9H270 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS11Q9H270 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
VPS11Q9H270 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.68■□□□□ 0.42
VPS11Q9H270 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS11Q9H270 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VPS11Q9H270 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS11Q9H270 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VPS11Q9H270 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS11Q9H270 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS11Q9H270 KRT18P65-201ENST00000439811 1286 ntBASIC17.68■□□□□ 0.42
VPS11Q9H270 DDX43P3-201ENST00000441064 443 ntBASIC17.68■□□□□ 0.42
VPS11Q9H270 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS11Q9H270 GCSHP2-201ENST00000560971 527 ntBASIC17.68■□□□□ 0.42
VPS11Q9H270 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS11Q9H270 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS11Q9H270 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS11Q9H270 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VPS11Q9H270 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS11Q9H270 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS11Q9H270 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
VPS11Q9H270 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS11Q9H270 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS11Q9H270 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms