Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 RAB43P1-201ENST00000561790 589 ntBASIC17.09■□□□□ 0.33
CFAP54Q96N23 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CFAP54Q96N23 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CFAP54Q96N23 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CFAP54Q96N23 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.08■□□□□ 0.33
CFAP54Q96N23 DGCR5-201ENST00000399539 862 ntBASIC17.08■□□□□ 0.33
CFAP54Q96N23 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.08■□□□□ 0.33
CFAP54Q96N23 AL135744.1-201ENST00000565098 629 ntBASIC17.08■□□□□ 0.33
CFAP54Q96N23 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
CFAP54Q96N23 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
CFAP54Q96N23 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CFAP54Q96N23 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CFAP54Q96N23 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CFAP54Q96N23 AC112492.5-201ENST00000421897 457 ntBASIC17.08■□□□□ 0.32
CFAP54Q96N23 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 TP53TG3HP-202ENST00000569755 579 ntBASIC17.08■□□□□ 0.32
CFAP54Q96N23 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CFAP54Q96N23 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CFAP54Q96N23 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CFAP54Q96N23 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CFAP54Q96N23 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CFAP54Q96N23 AC087289.5-201ENST00000586076 3175 ntBASIC17.08■□□□□ 0.32
CFAP54Q96N23 AL139099.5-201ENST00000635274 300 ntBASIC17.07■□□□□ 0.32
CFAP54Q96N23 COX11-210ENST00000639671 696 ntBASIC17.07■□□□□ 0.32
CFAP54Q96N23 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 AC112191.1-201ENST00000523689 701 ntBASIC17.07■□□□□ 0.32
CFAP54Q96N23 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 AC243562.1-201ENST00000560672 389 ntBASIC17.07■□□□□ 0.32
CFAP54Q96N23 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 AC004233.3-201ENST00000607794 1269 ntBASIC17.07■□□□□ 0.32
CFAP54Q96N23 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CFAP54Q96N23 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.07■□□□□ 0.32
CFAP54Q96N23 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms