Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 KRT8P50-201ENST00000562022 1438 ntBASIC5.45□□□□□ -1.54
SYNE1Q8NF91 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 KRT18P58-201ENST00000527480 1120 ntBASIC5.45□□□□□ -1.54
SYNE1Q8NF91 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 AC233702.3-201ENST00000578656 1387 ntBASIC5.45□□□□□ -1.54
SYNE1Q8NF91 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 CCS-201ENST00000310190 942 ntTSL 5 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 AC073648.2-201ENST00000510116 352 ntBASIC5.45□□□□□ -1.54
SYNE1Q8NF91 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC5.45□□□□□ -1.54
SYNE1Q8NF91 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC5.45□□□□□ -1.54
SYNE1Q8NF91 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AL163051.1-201ENST00000569214 1512 ntBASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 BMF-207ENST00000559701 630 ntTSL 3 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AL355877.3-201ENST00000622820 899 ntBASIC5.44□□□□□ -1.54
SYNE1Q8NF91 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ENSA-205ENST00000361532 792 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 OR6D1P-202ENST00000641007 5290 ntBASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 FIS1-203ENST00000442303 631 ntTSL 3 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 HEIH-201ENST00000623091 1652 ntBASIC5.44□□□□□ -1.54
SYNE1Q8NF91 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms