Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 REXO1L11P-201ENST00000620964 1927 ntBASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
USHBP1Q8N6Y0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 AC090164.3-201ENST00000610780 2143 ntBASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 PON3-203ENST00000427422 894 ntTSL 3 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 AC106028.4-201ENST00000614509 607 ntBASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 AC091812.2-201ENST00000619081 385 ntBASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
USHBP1Q8N6Y0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 BX323043.1-201ENST00000641006 1765 ntBASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 AC092919.2-201ENST00000623631 1645 ntBASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 GGTLC5P-201ENST00000617623 998 ntBASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 KRT18P55-202ENST00000578578 1546 ntBASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC23.02■■□□□ 1.28
USHBP1Q8N6Y0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 AC074386.1-202ENST00000463561 864 ntBASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 AP002472.1-201ENST00000577490 586 ntBASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC23.01■■□□□ 1.27
USHBP1Q8N6Y0 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 AL135999.2-201ENST00000622438 1686 ntBASIC23■■□□□ 1.27
USHBP1Q8N6Y0 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 AL139400.1-201ENST00000366220 510 ntBASIC23■■□□□ 1.27
USHBP1Q8N6Y0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 ATP6V0CP3-201ENST00000417255 467 ntBASIC23■■□□□ 1.27
USHBP1Q8N6Y0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 AC093028.1-201ENST00000622998 982 ntBASIC23■■□□□ 1.27
USHBP1Q8N6Y0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC23■■□□□ 1.27
USHBP1Q8N6Y0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms