Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 DNAJB3-202ENST00000449667 1266 ntBASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 SIGLEC30P-201ENST00000455569 941 ntBASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 AL589182.2-201ENST00000619332 1049 ntBASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 AC005593.1-201ENST00000624894 515 ntBASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 AC009113.1-201ENST00000570267 2443 ntBASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
HDDC3Q8N4P3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 FLJ13224-201ENST00000313737 1514 ntBASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.61■□□□□ 0.41
HDDC3Q8N4P3 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 KRT18P27-201ENST00000427733 1299 ntBASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 STK19B-204ENST00000512515 211 ntBASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 PGM5P2-202ENST00000637225 1043 ntBASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDDC3Q8N4P3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
HDDC3Q8N4P3 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms