Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 AC011676.5-201ENST00000624864 2660 ntBASIC16.53■□□□□ 0.24
CLIP4Q8N3C7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 AC005521.1-201ENST00000393351 872 ntBASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CLIP4Q8N3C7 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 NKILA-202ENST00000614771 2598 ntBASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLIP4Q8N3C7 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 KRT89P-201ENST00000620027 1478 ntBASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 STARP1-201ENST00000397973 869 ntBASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 AC117947.1-201ENST00000427448 529 ntBASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 HLA-F-220ENST00000434407 884 ntBASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 AC092597.1-201ENST00000487352 616 ntBASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.51■□□□□ 0.23
CLIP4Q8N3C7 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms