Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 AC106820.2-201ENST00000563775 3264 ntBASIC17.17■□□□□ 0.34
VRK3Q8IV63 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 UNC93B7-201ENST00000509439 705 ntBASIC17.17■□□□□ 0.34
VRK3Q8IV63 IGHV3-52-201ENST00000519770 353 ntBASIC17.17■□□□□ 0.34
VRK3Q8IV63 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 AP001269.4-201ENST00000609611 512 ntBASIC17.17■□□□□ 0.34
VRK3Q8IV63 AL121772.3-201ENST00000610840 674 ntBASIC17.17■□□□□ 0.34
VRK3Q8IV63 AP000867.4-201ENST00000641616 219 ntBASIC17.17■□□□□ 0.34
VRK3Q8IV63 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.17■□□□□ 0.34
VRK3Q8IV63 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VRK3Q8IV63 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VRK3Q8IV63 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 PMPCAP1-201ENST00000508114 1576 ntBASIC17.16■□□□□ 0.34
VRK3Q8IV63 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.16■□□□□ 0.34
VRK3Q8IV63 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.16■□□□□ 0.34
VRK3Q8IV63 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 ABCD1P5-201ENST00000445663 754 ntBASIC17.16■□□□□ 0.34
VRK3Q8IV63 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.16■□□□□ 0.34
VRK3Q8IV63 AC091304.2-201ENST00000564639 760 ntBASIC17.16■□□□□ 0.34
VRK3Q8IV63 STK25P1-201ENST00000585406 838 ntBASIC17.16■□□□□ 0.34
VRK3Q8IV63 AC073592.5-201ENST00000624854 528 ntBASIC17.16■□□□□ 0.34
VRK3Q8IV63 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.16■□□□□ 0.34
VRK3Q8IV63 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
VRK3Q8IV63 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VRK3Q8IV63 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VRK3Q8IV63 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VRK3Q8IV63 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.15■□□□□ 0.34
VRK3Q8IV63 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 AC111152.3-201ENST00000569699 673 ntBASIC17.15■□□□□ 0.34
VRK3Q8IV63 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VRK3Q8IV63 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms