Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 AC134684.3-201ENST00000641758 218 ntBASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 AC020763.4-201ENST00000623414 4170 ntBASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.12■□□□□ 0.81
SH3RF1Q7Z6J0 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 AL591424.1-201ENST00000442569 1213 ntBASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 AC004967.1-201ENST00000453589 447 ntBASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 Z83851.2-201ENST00000609564 659 ntBASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SH3RF1Q7Z6J0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 SIRPAP1-201ENST00000448467 1770 ntBASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 AP005117.1-201ENST00000584346 1413 ntBASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 INTS4P1-201ENST00000438455 1935 ntBASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.1■□□□□ 0.81
SH3RF1Q7Z6J0 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 HLA-J-201ENST00000462773 1622 ntBASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 LTB4R2-202ENST00000528054 3092 ntBASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 MIR3687-2-201ENST00000577708 61 ntBASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 MIR3687-1-201ENST00000614492 61 ntBASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 AC108860.2-201ENST00000562760 2183 ntBASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.09■□□□□ 0.81
SH3RF1Q7Z6J0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.08■□□□□ 0.81
SH3RF1Q7Z6J0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms